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Counts Table: column names must be sample name Annotation table
Counts Table:
1. Column names must be sample name
2. The first column must be Tax id
Annotation table:
1. Row names must be sample name
2. The first row must sample attribute labels
Note: Please check http://biom-format.org/documentation/adding_metadata.html to add sample metadate into .biom file if sample metadata is missing.
Counts Table Annotation table Taxonomy tableTB 16S profiling
TB 16S profiling is a real dataset containing 30 samples and 417 microbes.
Reference: Botero LE, Delgado-Serrano L, Cepeda ML, Bustos JR, Anzola JM, Del Portillo P, Robledo J, Zambrano MM. Respiratory tract clinical sample selection for microbiota analysis in patients with pulmonary tuberculosis. Microbiome. 2014 Aug 25. doi: 10.1186/2049-2618-2-29.
Asthma metatranscriptomics
Nasal swabs metatranscriptomic data from 8 asthma children and 6 control children.
Castro-Nallar E, Shen Y, Freishtat RJ, Pérez-Losada M, Manimaran S, Liu G, Johnson WE, Crandall KA. Integrating microbial and host transcriptomics to characterize asthma-associated microbial communities. BMC Med Genomics. 2015 Aug 16;8:50. doi: 10.1186/s12920-015-0121-1. PubMed PMID: 26277095; PubMed Central PMCID: PMC4537781.
Simulated dataset
Simulated dataset is a small synthetic microbiome dataset containing 50 samples and 100 microbes. It's loaded already, so you could simply continue and play with animalcules from this point!
Counts Table:
1. Column names must be sample name
2. The first column must be microbe name
Taxonomy Table:
1. Column names must be taxonomy levels, like family, genus, species...
2. The first column must be microbe name
Annotation table:
1. Row names must be sample name
2. The first row must sample attribute labels