• Software references
  • 1. R Development Core Team. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna (2016)
    2. RStudio and Inc. shiny: Web Application Framework for R. R package version 1.0.0 (2016)
    3. Gu, Z. circlize: Circular Visualization. R package version 0.4.1 (2017)
    4. Neuwirth, E. RColorBrewer: ColorBrewer palettes. R package version 1.1-2 (2014)
    5. Lawrence, M. GenomicRanges: Representation and manipulation of genomic intervals and variables defined along a genome. R package version 1.24.3 (2016)
    6. Dowle, M. data.table: Extension of Data.frame. R package version 1.9.6 (2015)
    7. Burow, C. RLumShiny: "Shiny" Applications for the R Package "Luminescence". R package version 0.1.1 (2016)
    8. R Core Team and contributors worldwide. grDevices: Graphics devices and support for base and grid graphics. R package version 3.3.3 (2016)

  • Further references
  • This application was created by Wen Yao and Yiming Yu . Please send bugs and feature requests to Wen Yao (ywhzau at gmail.com) or Yiming Yu (yimingyyu at gmail.com). This application uses the shiny package from RStudio .

  • Please cite
  • Yiming Yu, Yidan Ouyang, and Wen Yao. shinyCircos: an R/Shiny application for interactive creation of Circos plot. Bioinformatics. 2017 Nov. 24. doi:10.1093/bioinformatics/btx763

  • !!Note!!
  • Users are encouraged to install and use shinyCircos on local personal computers. Please check the help menu of the shinyCircos application or https://github.com/venyao/shinyCircos for the installation of shinyCircos on local computers.