Thank you for using UCSCXenaShiny v2.2.0 based on UCSCXenaTools v1.4.8. Our web tool aims to povide a user-friendly platform to explore UCSC Xena datasets for both general and personalized cancer molecular research. If you have any questions during use, please do not hesitate to contact us via Github issue. If the tool has faciliated your research, welcome to cite our work. :)
Compare one multi-omics molecular value between tumor and normal (including GTEx) samples.
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Calculate the correlation of two multi-omics molecules acccording to their values in tumor samples.
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Perform the log-rank test analysis of one multi-omics molecule in tumor samples of one cancer type.
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Compare one of integrated identifiers (e.g. omis, non-omics, user-defined) based on two customizable groups of samples.
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Calculate the correlation between any two of integrated identifiers (e.g. omis, non-omics, user-defined) among custom samples
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Perform log-rank test analysis for one of integrated identifiers based on two customizable groups of samples.
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Here, we introduced multiple custom modules for quick TPC molecule exploration with few steps. In general, 10 panels for common analytical scenario are available, as follows:
We designate one specific UCSC Xena dataset for each molecular type of TPC databases. You can check the detailed information through the links below.
Tips: The menu of
TPC Pipelins
supports more general and personalized TPC molecular analysis, including alternative datasets, precise data preparation and versatile modes.
Here, we introduced a series of personalized TPC pipelines for comprehensive and precise TPC molecule exploration with various operations. In general, 9 panels for common analytical scenario are available, as follows:
Generally, each analytical pipeline comprises of three main subpanels (S1, S2, S3).
Tips: The menu of
TPC modules
enable specific and quick TPC molecular analysis, such as tumor and tomor comparison, molecule and molecule correlation.
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