<div> V-SVA: A Shiny app for Visual Surrogate Variable Analysis <img height="88" width="217" src="jax.logo.gif" class="pull-right"/> </div>

V-SVA: A Shiny app for Visual Surrogate Variable Analysis

Download Histogram

Graphing Options

Color Points

SV's to Plot

Correlation Plot

Download Correlation Plot

Download Correlation Table

Surrogate Variables Plot

Download SV Plot

Download SV Table

Download Pairwise Plot

Color Points

SV X-axis

SV Y-axis

Choose SVs

P-Value Adjustment

Adjusted P-value cutoff

R-squared cutoff

Known Factors to Include in Heatmap

Download Heatmap

Marker Genes Table:

Download Marker Genes Table

Dimension Reduction

Color Points

Download All Genes Plot

Download All Genes Coordinates

Download Marker Genes Plot

Download Marker Genes Coordinates

Species

Enrichment Analysis Type

Enrichment Analysis Type

Enrichment Analysis Type

Upload custom gene and module file

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Upload custom module identifier file

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P-value cutoff

P-value Adjustment

Adjusted P-value cutoff

Max # of Results to Visualize

Download Enrichment Analysis Plot

Gene Enrichment Analysis Table

Download Enrichment Analysis Results Table

Generate report